A survey of exact motif finding algorithms

Exact algorithms for motif search

In this paper we study the problem of identifying meaningful patterns (i.e., motifs) from biological data. The general version of this problem is NP-hard. Numerous algorithms have been proposed in the literature to solve this problem. Many of these algorithms fall under the category of approximation algorithms. We concentrate on exact algorithms in this paper. In particular, we concentrate on t...

Exact algorithms for planted motif challenge problems

The problem of identifying meaningful patterns (i.e., motifs) from biological data has been studied extensively due to its paramount importance. Three versions of this problem have been identified in the literature. One of these three problems is the planted (l, d)-motif problem. Several instances of this problem have been posed as a challenge. Numerous algorithms have been proposed in the lite...

A SURVEY OF DEOXYRIBONUCLEIC ACID MOTIF FINDING ALGORITHMS By MODAN KUMAR DAS

Voting algorithms for the motif finding problem.

UNLABELLED Finding motifs in many sequences is an important problem in computational biology, especially in identification of regulatory motifs in DNA sequences. Let c be a motif sequence. Given a set of sequences, each is planted with a mutated version of c at an unknown position, the motif finding problem is to find these planted motifs and the original c. In this paper, we study the VM model...

a structural survey of the polish posters

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